Overall Thoughts
Well, you managed to trigger a feeling of tryptophobia with the images you put in my head, so that's good for the creep factor.
However, apart from the initial feeling of creepiness, you basically have just a description of the thing. You give us the "what", but don't really expand beyond the idea of "this is a creepy humanoid that is hostile to people." Although SCPs are supposed to be clinical documents, they should have a sense of narrative, a short story within a scientific report. You might want to elaborate on the Skip's motives/purpose/background; how will it be significant enough to stand out from the hundreds of other creepy humanoids that go bump in the night?
I would downvote this in its current state, because there's not a lot of stuff here to make me truly care about this particular humanoid.
There are a few tonal errors throughout the description (SCP documents should not be written with intent to be purposefully scary/invoke fear in the reader; remember, they're scientific reports in the end):
Removing subject’s tongue and vocal cords merely resulted in it babbling incoherently until the organs regenerated.
Note: "babbling incoherently" sounds exactly like SCP-096's description; might wanna change that.
It rants continuously about the preciousness of sight and its terror of the dark, about how it must never stop watching. Subject has never identified any specific reason why it must not stop watching, and its extreme phobia of darkness/blindness appears to be generic.
"ritualistically praising it for the gift of sight and fearfully lamenting its passing"
A couple grammar errors as well:
Although significantly stronger than an average Human
"Human" doesn't have to be capitalized.
Victims however are often contaminated with SCP-2049's effluvia, inevitably resulting in [DATA EXPUNGED].
Analysis of genetic and tissue samples have shown that SCP-2049 is [DATA EXPUNGED].
Kind of poor information redaction in both cases here; it comes off more like an attempt to be scary instead of withholding really sensitive information.
It does however produce various secretions, requiring its cell to be periodically decontaminated.
Do the secretions pose any interest to the Foundation, or are they just like sweat, waste, spit, etc.?